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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
43
single cell RNA-seq
31
ChIP-seq
6
total RNA-seq
3
Hi-C
1
MPRA
Assay category
187
DNA accessibility
49
Transcription
31
DNA binding
3
3D chromatin structure
Target of assay
19
histone
19
histone modification
11
narrow histone mark
8
broad histone mark
8
control
4
RNA binding protein
4
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
267
bam
259
bigWig
210
bed narrowPeak
210
bigBed narrowPeak
187
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
49
tsv
44
fastq
3
bedpe bed3+
3
cool
3
hic
1
txt
Organism
270
Homo sapiens
Biosample type
169
tissue
101
primary cell
1
cell line
Organ
81
kidney
56
epithelium
46
pancreas
43
musculature of body
35
heart
32
limb
30
brain
20
connective tissue
18
ureter
7
eye
7
vasculature
5
blood vessel
2
artery
2
liver
1
adipose tissue
Project
268
AMP
3
HPAP
Genome assembly (visualization)
259
GRCh38
239
hg19
Lab
268
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
26
inconsistent ontology term
3
audit script error
month_released!
November, 2019
BIOSAMPLE
ASSAY
271 results
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Clear Filters
DNase-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
Hi-C
MPRA
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 35 more…
primary cell
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
pancreatic acinar cell
6
1
pancreatic delta cell
7
+ See 27 more…
cell line
MIN6
1
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