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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
ChIP-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
72
DNA binding
4
Transcription
1
3D chromatin structure
Target of assay
55
control
13
histone
13
histone modification
8
narrow histone mark
5
broad histone mark
4
transcription factor
2
RNA binding protein
Date released
272
August, 2021
202
February, 2023
180
May, 2022
164
February, 2021
139
August, 2017
107
October, 2019
96
May, 2021
81
May, 2020
72
November, 2017
56
September, 2020
47
September, 2023
44
March, 2020
November, 2019
29
October, 2018
25
February, 2020
23
July, 2019
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
11
November, 2020
9
October, 2017
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
September, 2018
Available data
392
bam
bigWig
324
fastq
313
bed narrowPeak
312
bigBed narrowPeak
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
3
tar
1
hic
Organism
73
Homo sapiens
Biosample type
49
cell line
25
tissue
2
stem cell
1
primary cell
Organ
47
liver
25
brain
Project
72
AMP
4
community
1
ITG
Genome assembly (visualization)
2
GRCh38
Lab
72
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
month_released!
November, 2019
files.file_type!
bigWig
BIOSAMPLE
ASSAY
77 results
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Clear Filters
ChIP-seq
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
cell line
HepG2
47
EndoC-BH1
1
1
tissue
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
caudate nucleus
3
middle frontal area 46
3
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stem cell
SB Ad3.1
1
1
primary cell
chondrocytes
1
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