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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
152
ChIP-seq
Assay category
481
Transcription
152
DNA binding
30
DNA accessibility
7
DNA methylation
1
3D chromatin structure
Target of assay
77
histone
77
histone modification
44
broad histone mark
40
transcription factor
35
control
32
narrow histone mark
10
RNA binding protein
2
chromatin remodeller
Date released
117
August, 2017
23
October, 2018
12
June, 2019
October, 2019
Available data
102
bam
90
fastq
75
bigWig
58
bed narrowPeak
22
tagAlign
15
bigBed narrowPeak
11
bed bed3+
1
bed broadPeak
Organism
152
Homo sapiens
Biosample type
73
tissue
67
in vitro differentiated cells
12
primary cell
Organ
547
liver
192
pancreas
152
connective tissue
134
brain
129
heart
92
epithelium
73
adipose tissue
62
vasculature
60
blood
60
bodily fluid
59
blood vessel
39
musculature of body
31
kidney
22
embryo
20
spleen
11
artery
7
limb
3
eye
Project
152
AMP
Genome assembly (visualization)
76
hg19
75
GRCh38
Lab
152
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
month_released!
November, 2019
October, 2019
BIOSAMPLE
ASSAY
152 results
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ChIP-seq
tissue
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
12
white adipose tissue
12
omental fat pad
11
adipose tissue
2
in vitro differentiated cells
adipocyte
67
primary cell
mesenchymal stem cell
7
cardiac fibroblast
5
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