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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
total RNA-seq
30
ATAC-seq
24
ChIP-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
RNA microarray
Assay category
37
Transcription
31
DNA accessibility
24
DNA binding
Target of assay
17
histone
17
histone modification
10
narrow histone mark
7
broad histone mark
7
control
3
nucleotide modification
3
transcription factor
2
RNA binding protein
1
chromatin remodeller
Date released
26
February, 2021
26
May, 2021
19
December, 2017
November, 2019
15
February, 2023
6
November, 2020
5
March, 2020
2
August, 2021
2
October, 2019
1
December, 2019
Available data
60
bam
58
bigWig
39
tsv
33
bed narrowPeak
19
fastq
15
bigBed narrowPeak
3
tagAlign
Organism
101
Homo sapiens
Biosample type
primary cell
63
cell line
24
in vitro differentiated cells
15
tissue
Organ
777
liver
644
connective tissue
545
pancreas
488
adipose tissue
380
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
102
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
98
AMP
4
T1D
Genome assembly (visualization)
70
hg19
56
GRCh38
Lab
96
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
65
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent control read length
month_released!
November, 2019
biosample_type!
primary cell
BIOSAMPLE
ASSAY
102 results
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total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
RNA microarray
cell line
EndoC_BH1
32
18
2
6
2
1
glomerular visceral epithelial cell
1
1
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
pancreatic PP cell
3
endothelial cell
1
intermediate endothelial cell
1
tissue
pigmented layer of retina
2
12
renal glomerulus
1
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