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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
417
total RNA-seq
78
ChIP-seq
33
ATAC-seq
6
DNase-seq
6
WGBS
6
pCHi-C
3
small RNA-seq
1
RNA microarray
1
RRBS
Assay category
420
Transcription
78
DNA binding
39
DNA accessibility
7
DNA methylation
Target of assay
35
histone
35
histone modification
25
control
20
broad histone mark
18
transcription factor
15
narrow histone mark
6
RNA binding protein
Date released
386
February, 2021
57
August, 2017
32
February, 2023
23
October, 2018
22
October, 2019
13
July, 2019
8
June, 2019
3
February, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2018
November, 2019
1
October, 2017
Available data
448
bam
431
bigWig
406
tsv
45
bed narrowPeak
44
fastq
16
bigBed narrowPeak
10
bed bed3+
8
tagAlign
7
bed broadPeak
6
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
550
Homo sapiens
Biosample type
543
tissue
7
primary cell
1
in vitro differentiated cells
Organ
891
pancreas
791
liver
683
connective tissue
508
epithelium
490
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
551
AMP
Genome assembly (visualization)
459
hg19
429
GRCh38
Lab
551
AMP-T2D consortium
Audit category:
12
missing controlled_by
month_released!
November, 2019
BIOSAMPLE
ASSAY
551 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
small RNA-seq
RNA microarray
RRBS
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
islet of Langerhans
14
2
1
4
retina
3
15
3
+ See 4 more…
primary cell
retinal pigment epithelial cell
3
1
1
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
See all biosamples
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