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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
81
total RNA-seq
41
ATAC-seq
25
ChIP-seq
6
pCHi-C
5
DNase-seq
2
WGBS
1
RRBS
Assay category
81
Transcription
46
DNA accessibility
25
DNA binding
3
DNA methylation
Target of assay
9
control
9
histone
9
histone modification
7
transcription factor
5
narrow histone mark
4
broad histone mark
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
150
February, 2021
39
February, 2023
21
October, 2019
9
November, 2018
7
December, 2018
7
January, 2019
7
June, 2019
1
February, 2020
1
July, 2019
1
March, 2020
1
May, 2021
1
October, 2017
Available data
97
bam
88
txt
80
bigWig
64
tsv
55
bed narrowPeak
24
fastq
19
bigBed narrowPeak
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
4
bed bed3
3
bed bedMethyl
3
bigBed bedMethyl
Organism
245
Homo sapiens
Biosample type
239
tissue
6
primary cell
Organ
891
pancreas
791
liver
683
connective tissue
508
epithelium
490
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
244
AMP
1
T1D
Genome assembly (visualization)
118
hg19
88
GRCh38
Lab
244
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
month_released!
November, 2019
BIOSAMPLE
ASSAY
245 results
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RNA microarray
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
DNase-seq
WGBS
RRBS
tissue
bone element
84
bone tissue
58
spleen
1
20
1
1
2
islet of Langerhans
14
1
2
4
retina
3
15
3
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primary cell
retinal pigment epithelial cell
3
1
1
megakaryocyte
1
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