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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
13
ATAC-seq
10
total RNA-seq
6
Hi-C
5
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
29
DNA binding
14
DNA accessibility
13
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
25
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
4
control
Date released
June, 2019
26
August, 2017
10
July, 2019
8
February, 2021
8
February, 2023
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
27
bed narrowPeak
27
bigWig
22
bam
15
tagAlign
13
bed broadPeak
9
tsv
6
bigBed narrowPeak
5
txt
4
bed bed3
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
bed bed3+
Organism
69
Homo sapiens
Biosample type
66
tissue
3
primary cell
Organ
887
pancreas
789
liver
665
connective tissue
489
adipose tissue
488
epithelium
358
heart
273
kidney
256
brain
229
vasculature
225
blood vessel
159
bone element
139
artery
90
limb
69
blood
69
bodily fluid
54
eye
53
musculature of body
43
nerve
37
embryo
25
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
69
AMP
Genome assembly (visualization)
44
hg19
20
GRCh38
Lab
69
AMP-T2D consortium
Audit category:
1
audit script error
month_released!
November, 2019
June, 2019
BIOSAMPLE
ASSAY
69 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
1
4
1
1
1
muscle of leg
7
1
gastrocnemius medialis
1
4
psoas muscle
2
2
1
acetabular part of hip bone
1
1
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primary cell
skeletal muscle satellite cell
1
1
skeletal muscle cell
1
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