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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ATAC-seq
2
Capture-C
1
ChIP-seq
1
Hi-C
1
RRBS
1
pCHi-C
Assay category
20
DNA accessibility
1
3D chromatin structure
1
DNA binding
1
DNA methylation
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
10
February, 2023
5
February, 2021
4
August, 2021
3
October, 2019
2
July, 2019
1
August, 2017
1
January, 2018
Available data
8
bed bed3+
8
bigWig
5
bed bed3
4
bed bedgraph
4
bed narrowPeak
3
bigBed narrowPeak
1
bam
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
hdf5
1
tagAlign
Organism
26
Homo sapiens
Biosample type
19
in vitro differentiated cells
4
tissue
3
primary cell
Organ
99
liver
39
pancreas
33
epithelium
28
eye
26
connective tissue
21
musculature of body
11
brain
11
vasculature
9
blood vessel
6
heart
6
kidney
5
vein
4
adipose tissue
4
bone element
4
skeleton
1
blood
1
bodily fluid
1
limb
1
pericardium
Project
26
AMP
Genome assembly (visualization)
583
hg19
GRCh38
Lab
22
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
month_released!
November, 2020
assembly!
GRCh38
BIOSAMPLE
ASSAY
26 results
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ATAC-seq
Capture-C
ChIP-seq
Hi-C
RRBS
pCHi-C
in vitro differentiated cells
adipocyte
8
1
chondrocyte
5
immature adipocyte
2
osteoblast
1
1
preadipocyte
1
tissue
adipose tissue
3
subcutaneous abdominal adipose tissue
1
primary cell
brain pericyte
1
cardiac fibroblast
1
osteoblast
1
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