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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
ChIP-seq
95
total RNA-seq
26
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
Capture-C
2
DNase-seq
2
Hi-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
105
DNA binding
97
Transcription
28
DNA accessibility
2
3D chromatin structure
Target of assay
64
transcription factor
20
control
19
histone
19
histone modification
11
RNA binding protein
10
broad histone mark
10
chromatin remodeller
9
narrow histone mark
7
recombinant protein
Date released
94
February, 2021
30
October, 2019
27
December, 2018
21
May, 2021
18
January, 2019
16
November, 2019
15
November, 2018
13
August, 2021
March, 2020
6
February, 2023
November, 2020
2
March, 2023
1
January, 2018
1
October, 2022
Available data
211
bam
183
bigWig
95
bed narrowPeak
95
tsv
62
bigBed narrowPeak
60
fastq
8
tagAlign
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
1
txt
Organism
240
Homo sapiens
Biosample type
2375
tissue
1067
primary cell
371
in vitro differentiated cells
244
cell line
6
stem cell
Organ
liver
81
pancreas
68
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
17
kidney
8
embryo
Project
236
AMP
6
T1D
2
community
Genome assembly (visualization)
193
hg19
191
GRCh38
Lab
234
AMP-T2D consortium
5
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
2
Anna Gloyn, Oxford
Audit category:
79
inconsistent ontology term
1
inconsistent control
Audit category:
1
inconsistent assembly
month_released!
November, 2020
March, 2020
organ_slims!
liver
BIOSAMPLE
ASSAY
244 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
STARR-seq
Capture-C
DNase-seq
Hi-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
shRNA RNA-seq
siRNA RNA-seq
cell line
EndoC_BH1
14
31
17
3
2
1
2
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
1
Panc1
13
1
1
H1-hESC
8
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