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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
ATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
total RNA-seq
Assay category
13
DNA binding
1
3D chromatin structure
1
DNA accessibility
1
Transcription
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
315
November, 2017
96
February, 2021
61
November, 2018
44
August, 2021
30
October, 2019
28
December, 2018
23
January, 2019
21
May, 2021
16
November, 2019
11
March, 2020
6
February, 2023
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
15
bam
12
bed narrowPeak
12
bigWig
1
bedpe bed3+
1
hic
1
tsv
Organism
21
Homo sapiens
Biosample type
135
tissue
88
primary cell
22
cell line
21
in vitro differentiated cells
Organ
17
epithelium
17
pancreas
Project
17
AMP
5
T1D
Genome assembly (visualization)
14
hg19
13
GRCh38
Lab
17
AMP-T2D consortium
5
Kyle Gaulton, UCSD
Audit category:
16
inconsistent ontology term
month_released!
November, 2020
BIOSAMPLE
ASSAY
22 results
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Clear Filters
ChIP-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
ATAC-seq
CRISPR genome editing followed by sgRNA sequencing
Hi-C
total RNA-seq
cell line
EndoC_BH1
13
3
2
1
1
1
1
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