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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
207
ChIP-seq
146
total RNA-seq
100
single cell RNA-seq
48
ATAC-seq
26
DNase-seq
2
small RNA-seq
1
Hi-C
Assay category
248
Transcription
207
DNA binding
74
DNA accessibility
1
3D chromatin structure
Target of assay
198
histone
198
histone modification
102
narrow histone mark
96
broad histone mark
9
RNA binding protein
9
transcription factor
3
control
1
chromatin remodeller
Date released
149
May, 2021
72
September, 2018
48
July, 2018
47
June, 2019
45
May, 2020
43
April, 2018
42
August, 2017
22
October, 2019
18
July, 2019
7
August, 2020
6
November, 2017
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
3
September, 2020
2
February, 2021
2
October, 2018
1
March, 2023
Available data
519
bam
514
bigWig
259
bed narrowPeak
248
tsv
229
fastq
104
bigBed narrowPeak
98
tagAlign
44
bed broadPeak
44
bigBed broadPeak
29
bed bed3+
1
bed bed3
1
hic
Organism
530
Homo sapiens
Biosample type
1819
tissue
530
primary cell
464
cell line
265
in vitro differentiated cells
3
stem cell
Organ
225
epithelium
192
pancreas
28
kidney
26
connective tissue
22
vasculature
18
blood vessel
14
brain
12
vein
11
liver
11
musculature of body
10
heart
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
339
AMP
180
T1D
10
HPAP
1
ITG
Genome assembly (visualization)
622
hg19
530
GRCh38
Lab
339
AMP-T2D consortium
180
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
1
ITG
Audit category:
36
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
November, 2020
BIOSAMPLE
ASSAY
530 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
primary cell
monocyte
84
53
13
pancreatic alpha cell
7
10
12
13
pancreatic beta cell
7
10
12
10
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
4
12
5
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