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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
ChIP-seq
146
total RNA-seq
100
single cell RNA-seq
48
ATAC-seq
26
DNase-seq
2
small RNA-seq
1
Hi-C
Assay category
248
Transcription
206
DNA binding
74
DNA accessibility
1
3D chromatin structure
Target of assay
198
histone
198
histone modification
102
narrow histone mark
96
broad histone mark
9
RNA binding protein
9
transcription factor
3
control
chromatin remodeller
Date released
149
May, 2021
72
September, 2018
48
July, 2018
47
June, 2019
45
May, 2020
43
April, 2018
41
August, 2017
22
October, 2019
18
July, 2019
7
August, 2020
6
November, 2017
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
3
September, 2020
2
February, 2021
2
October, 2018
1
March, 2023
Available data
518
bam
513
bigWig
258
bed narrowPeak
248
tsv
228
fastq
103
bigBed narrowPeak
98
tagAlign
43
bed broadPeak
43
bigBed broadPeak
29
bed bed3+
1
bed bed3
1
hic
Organism
529
Homo sapiens
Biosample type
1857
tissue
529
primary cell
436
cell line
262
in vitro differentiated cells
3
stem cell
Organ
225
epithelium
192
pancreas
28
kidney
26
connective tissue
22
vasculature
18
blood vessel
14
brain
12
vein
11
liver
11
musculature of body
10
heart
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
338
AMP
180
T1D
10
HPAP
1
ITG
Genome assembly (visualization)
621
hg19
529
GRCh38
Lab
338
AMP-T2D consortium
180
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
1
ITG
Audit category:
36
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
November, 2020
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
529 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
primary cell
monocyte
84
53
13
pancreatic alpha cell
7
10
12
13
pancreatic beta cell
7
10
12
10
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
4
12
5
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