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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
ATAC-seq
56
snATAC-seq
30
DNase-seq
1
FAIRE-seq
Assay category
277
Transcription
215
DNA accessibility
209
DNA binding
11
DNA methylation
7
3D chromatin structure
Date released
100
May, 2020
28
February, 2021
24
June, 2019
21
May, 2022
13
May, 2021
12
February, 2023
8
January, 2021
7
October, 2019
2
August, 2017
November, 2020
Available data
90
bam
75
bigWig
45
bed narrowPeak
29
bigBed narrowPeak
28
fastq
27
bed broadPeak
27
bigBed broadPeak
26
bed bed3+
21
zippedFastqFolder
12
tsv
1
bed bed3
1
tar
Organism
215
Homo sapiens
Biosample type
388
tissue
215
primary cell
43
in vitro differentiated cells
11
cell line
Organ
91
epithelium
pancreas
12
kidney
8
blood
8
bodily fluid
7
vasculature
6
connective tissue
5
blood vessel
5
brain
3
heart
3
liver
3
vein
1
eye
1
musculature of body
Project
159
AMP
48
HPAP
8
T1D
Genome assembly (visualization)
83
hg19
42
GRCh38
Lab
159
AMP-T2D consortium
48
Klaus Kaestner, Upenn
8
Kyle Gaulton, UCSD
Audit category:
27
audit script error
15
inconsistent ontology term
month_released!
November, 2020
organ_slims!
pancreas
BIOSAMPLE
ASSAY
215 results
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ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
48
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
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