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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ChIP-seq
162
total RNA-seq
128
ATAC-seq
113
single cell RNA-seq
56
snATAC-seq
30
DNase-seq
17
pCHi-C
10
RRBS
7
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
277
Transcription
215
DNA accessibility
200
DNA binding
11
DNA methylation
7
3D chromatin structure
Target of assay
176
histone
176
histone modification
95
broad histone mark
81
narrow histone mark
20
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
55
June, 2019
54
May, 2022
51
February, 2023
42
February, 2021
40
September, 2020
34
October, 2019
31
July, 2019
18
August, 2017
11
July, 2018
10
April, 2018
November, 2017
8
January, 2021
November, 2020
5
December, 2019
5
May, 2019
4
August, 2021
2
June, 2018
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
407
bigWig
400
bam
219
bed narrowPeak
158
tsv
142
fastq
100
tagAlign
80
bigBed narrowPeak
73
zippedFastqFolder
42
bed broadPeak
42
bigBed broadPeak
36
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
727
Homo sapiens
Biosample type
2190
tissue
727
primary cell
391
in vitro differentiated cells
255
cell line
10
stem cell
Organ
400
epithelium
pancreas
36
kidney
33
connective tissue
31
vasculature
28
blood vessel
22
vein
14
liver
14
musculature of body
13
heart
12
brain
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
350
AMP
204
T1D
172
HPAP
1
ITG
Genome assembly (visualization)
428
hg19
332
GRCh38
Lab
315
AMP-T2D consortium
239
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
1
ITG
Audit category:
49
inconsistent ontology term
28
audit script error
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
month_released!
November, 2020
November, 2017
organ_slims!
pancreas
BIOSAMPLE
ASSAY
727 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
Langerhans cell
85
48
CD8-positive, alpha-beta T cell
33
4
2
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
22
1
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