Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
41
WGBS
39
ATAC-seq
21
snATAC-seq
3
ChIP-seq
1
FAIRE-seq
Assay category
61
DNA accessibility
52
Transcription
41
DNA methylation
3
DNA binding
Target of assay
3
transcription factor
1
RNA binding protein
Date released
134
May, 2022
19
September, 2020
3
November, 2017
1
October, 2019
Available data
3386
bam
3124
bigWig
1775
bed narrowPeak
1596
tsv
1358
fastq
1041
bigBed narrowPeak
398
tagAlign
321
bed broadPeak
284
bigBed broadPeak
272
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
157
Homo sapiens
Biosample type
154
primary cell
3
cell line
Organ
81
epithelium
80
pancreas
3
liver
1
blood vessel
1
vasculature
1
vein
Project
153
HPAP
4
AMP
Genome assembly (visualization)
4
hg19
Lab
153
Klaus Kaestner, Upenn
4
AMP-T2D consortium
month_released!
November, 2020
BIOSAMPLE
ASSAY
157 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
ChIP-seq
FAIRE-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
endothelial cell of umbilical vein
1
cell line
HepG2
3
Download