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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
ATAC-seq
52
single cell RNA-seq
41
WGBS
21
snATAC-seq
3
ChIP-seq
1
FAIRE-seq
Assay category
125
DNA accessibility
52
Transcription
41
DNA methylation
3
DNA binding
Target of assay
3
transcription factor
1
RNA binding protein
Date released
134
May, 2022
64
August, 2021
19
September, 2020
3
November, 2017
1
October, 2019
Available data
3386
bam
3164
bigWig
1815
bed narrowPeak
1596
tsv
1358
fastq
1041
bigBed narrowPeak
398
tagAlign
321
bed broadPeak
284
bigBed broadPeak
272
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
221
Homo sapiens
Biosample type
154
primary cell
64
tissue
3
cell line
Organ
81
epithelium
80
pancreas
64
kidney
3
liver
1
blood vessel
1
vasculature
1
vein
Project
153
HPAP
68
AMP
Genome assembly (visualization)
64
GRCh38
4
hg19
Lab
153
Klaus Kaestner, Upenn
64
Katalin Susztak, Upenn
4
AMP-T2D consortium
month_released!
November, 2020
BIOSAMPLE
ASSAY
221 results
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Clear Filters
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
ChIP-seq
FAIRE-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
endothelial cell of umbilical vein
1
tissue
kidney
64
cell line
HepG2
3
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