Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
10
total RNA-seq
5
single cell RNA-seq
3
ATAC-seq
MPRA
1
snATAC-seq
Assay category
15
Transcription
4
DNA accessibility
Date released
89
February, 2021
7
February, 2023
7
May, 2022
Available data
3386
bam
3164
bigWig
1751
bed narrowPeak
1596
tsv
1358
fastq
1041
bigBed narrowPeak
398
tagAlign
321
bed broadPeak
284
bigBed broadPeak
272
bed bed3+
153
zippedFastqFolder
103
txt
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
22
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
103
Homo sapiens
Biosample type
100
tissue
3
in vitro differentiated cells
Organ
88
bone element
6
pancreas
5
kidney
4
skeleton
1
musculature of body
Project
103
AMP
Genome assembly (visualization)
4
hg19
Lab
94
AMP-T2D consortium
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
6
audit script error
month_released!
November, 2020
lab.title!
Katalin Susztak, Upenn
assay_title!
MPRA
BIOSAMPLE
ASSAY
103 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
tissue
bone element
84
islet of Langerhans
6
kidney
5
acetabular part of hip bone
1
ilium
1
+ See 3 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
See all biosamples
Download