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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
53
total RNA-seq
15
ATAC-seq
13
single cell RNA-seq
1
MPRA
Assay category
66
Transcription
15
DNA accessibility
Date released
91
February, 2021
57
August, 2021
17
February, 2023
May, 2022
1
October, 2022
Available data
3362
bam
3144
bigWig
1777
bed narrowPeak
1596
tsv
1334
fastq
1041
bigBed narrowPeak
398
tagAlign
321
bed broadPeak
284
bigBed broadPeak
271
bed bed3+
154
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
19
zippedFastqFolder
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
165
Homo sapiens
Biosample type
155
tissue
8
in vitro differentiated cells
2
cell line
1
primary cell
Organ
92
bone element
62
kidney
8
skeleton
6
connective tissue
1
brain
1
liver
Project
166
AMP
Genome assembly (visualization)
15
hg19
2
GRCh38
Lab
106
AMP-T2D consortium
57
Katalin Susztak, Upenn
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
5
audit script error
1
inconsistent replicate
month_released!
November, 2020
May, 2022
BIOSAMPLE
ASSAY
166 results
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Clear Filters
RNA microarray
total RNA-seq
ATAC-seq
single cell RNA-seq
MPRA
tissue
bone element
84
kidney
49
13
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
+ See 2 more…
in vitro differentiated cells
chondrocyte
5
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
HepG2
1
MIN6
1
primary cell
osteoblast
1
See all biosamples
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