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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
25
total RNA-seq
Assay category
83
DNA binding
25
Transcription
Target of assay
38
transcription factor
24
histone
24
histone modification
21
control
14
narrow histone mark
10
broad histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
715
February, 2021
399
May, 2021
395
August, 2017
385
November, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
83
December, 2017
83
November, 2018
80
April, 2019
75
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
37
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
83
bam
83
fastq
61
bed narrowPeak
61
bigWig
50
bigBed narrowPeak
25
tsv
9
bed bed3+
Organism
108
Homo sapiens
Biosample type
73
tissue
34
in vitro differentiated cells
1
stem cell
Organ
64
liver
18
epithelium
12
brain
10
embryo
3
blood vessel
3
heart
3
limb
3
vasculature
2
adipose tissue
2
artery
2
connective tissue
2
musculature of body
1
eye
1
nerve
1
pancreas
1
spinal cord
Project
108
AMP
Genome assembly (visualization)
66
GRCh38
66
hg19
Lab
108
AMP-T2D consortium
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
month_released!
November, 2020
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
108 results
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Clear Filters
ChIP-seq
total RNA-seq
tissue
liver
38
right lobe of liver
10
1
Ammon's horn
1
C1 segment of cervical spinal cord
1
amygdala
1
+ See 21 more…
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
7
Hepatic endoderm
3
Posterior foregut
3
definitive endodermal cell
3
+ See 1 more…
stem cell
hESC
1
See all biosamples
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