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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
164
total RNA-seq
51
single cell RNA-seq
18
small RNA-seq
8
Hi-C
6
ATAC-seq
4
WGBS
2
FAIRE-seq
Assay category
233
Transcription
8
3D chromatin structure
8
DNA accessibility
4
DNA methylation
Target of assay
3
control
Date released
715
February, 2021
406
November, 2017
405
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
94
December, 2017
85
July, 2019
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
249
bigWig
246
bam
229
tsv
50
fastq
bed bedMethyl
23
bigBed bedMethyl
7
bed narrowPeak
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
253
Homo sapiens
Biosample type
183
tissue
70
primary cell
Organ
161
pancreas
40
epithelium
19
connective tissue
17
heart
16
brain
12
adipose tissue
10
blood vessel
10
vasculature
9
liver
8
musculature of body
7
kidney
4
limb
3
artery
1
pericardium
Project
253
AMP
Genome assembly (visualization)
240
hg19
235
GRCh38
Lab
253
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
month_released!
November, 2020
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
253 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
Hi-C
ATAC-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
120
heart left ventricle
2
2
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
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primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic delta cell
4
pancreatic cell
3
+ See 29 more…
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