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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
234
total RNA-seq
170
ChIP-seq
106
ATAC-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
1
pCHi-C
Assay category
255
Transcription
170
DNA binding
108
DNA accessibility
27
DNA methylation
8
3D chromatin structure
Target of assay
119
histone
119
histone modification
61
narrow histone mark
58
broad histone mark
49
control
5
RNA binding protein
5
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
485
bam
442
bigWig
254
tsv
131
bed narrowPeak
99
bigBed narrowPeak
50
tagAlign
23
bed bedMethyl
23
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
569
Homo sapiens
Biosample type
385
tissue
183
primary cell
1
cell line
Organ
204
liver
62
vasculature
61
blood vessel
46
brain
46
heart
18
connective tissue
18
epithelium
17
musculature of body
16
kidney
12
adipose tissue
12
limb
8
artery
8
pancreas
2
pericardium
1
eye
Project
524
AMP
45
T1D
Genome assembly (visualization)
448
hg19
382
GRCh38
Lab
524
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
13
inconsistent ontology term
month_released!
November, 2020
BIOSAMPLE
ASSAY
569 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
pCHi-C
tissue
liver
145
50
1
thoracic aorta
2
16
1
ascending aorta
1
16
temporal lobe
1
15
1
aorta
13
2
+ See 28 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
kidney epithelial cell
1
5
1
B cell
2
2
+ See 49 more…
cell line
HepG2
1
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