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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
20
ChIP-seq
13
ATAC-seq
2
WGBS
2
pCHi-C
1
DNase-seq
Assay category
62
Transcription
20
DNA binding
14
DNA accessibility
2
DNA methylation
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
150
February, 2021
9
November, 2018
8
February, 2023
7
December, 2018
7
January, 2019
1
March, 2020
1
May, 2021
1
October, 2017
Available data
90
bam
88
txt
74
bigWig
59
tsv
24
fastq
22
bed narrowPeak
13
bigBed narrowPeak
4
bed bed3
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
184
Homo sapiens
Biosample type
183
tissue
1
primary cell
Organ
936
pancreas
liver
678
connective tissue
518
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
183
AMP
1
T1D
Genome assembly (visualization)
84
hg19
82
GRCh38
Lab
183
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
month_released!
November, 2020
organ_slims!
liver
BIOSAMPLE
ASSAY
184 results
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RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
DNase-seq
tissue
bone element
84
bone tissue
58
spleen
20
1
2
1
1
acetabular part of hip bone
1
1
ilium
1
1
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primary cell
megakaryocyte
1
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