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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
790
ChIP-seq
748
total RNA-seq
174
single cell RNA-seq
87
RNA microarray
24
pCHi-C
23
WGBS
14
small RNA-seq
12
Hi-C
9
RRBS
3
snDrop-seq
Assay category
936
Transcription
790
DNA binding
DNA accessibility
32
DNA methylation
12
3D chromatin structure
Target of assay
555
histone modification
554
histone
292
narrow histone mark
262
broad histone mark
158
control
77
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
537
February, 2021
222
October, 2019
193
May, 2020
157
August, 2021
134
August, 2017
113
May, 2019
82
November, 2017
80
April, 2019
63
July, 2019
48
December, 2017
47
September, 2023
40
May, 2024
31
March, 2020
24
February, 2020
23
October, 2018
21
May, 2022
15
October, 2017
12
November, 2018
9
April, 2020
9
February, 2023
7
December, 2018
7
January, 2019
4
May, 2023
3
December, 2019
3
May, 2021
Available data
1284
bam
1191
bigWig
801
tsv
522
bed narrowPeak
324
bigBed narrowPeak
222
tagAlign
152
fastq
150
txt
23
bed broadPeak
19
bed bedMethyl
19
bigBed bedMethyl
8
hic
7
bed bed3+
7
bedpe bed3+
6
csv
1
tagAlign bed3+
Organism
1883
Homo sapiens
Biosample type
1884
tissue
559
cell line
521
primary cell
348
in vitro differentiated cells
10
stem cell
Organ
539
connective tissue
480
adipose tissue
pancreas
336
liver
247
heart
233
brain
149
kidney
146
bone element
90
blood vessel
90
vasculature
78
limb
48
musculature of body
40
nerve
32
artery
25
eye
23
spleen
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1827
AMP
47
KPMP
9
LungMap
1
T1D
Genome assembly (visualization)
1171
GRCh38
1107
hg19
Lab
1706
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
9
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
89
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
16
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
November, 2020
organ_slims!
pancreas
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
1884 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
snDrop-seq
tissue
adipose tissue
2
382
1
3
liver
145
167
1
1
3
1
1
1
kidney
27
49
64
1
1
bone element
84
heart left ventricle
35
3
18
1
4
1
1
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