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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
790
ChIP-seq
Assay category
936
Transcription
790
DNA binding
388
DNA accessibility
32
DNA methylation
12
3D chromatin structure
Target of assay
555
histone modification
554
histone
292
narrow histone mark
262
broad histone mark
158
control
77
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
195
October, 2019
120
August, 2017
113
May, 2019
82
November, 2017
80
April, 2019
50
May, 2020
48
December, 2017
40
May, 2024
23
October, 2018
15
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
Available data
625
bam
533
bigWig
522
bed narrowPeak
324
bigBed narrowPeak
222
tagAlign
143
fastq
23
bed broadPeak
7
bed bed3+
1
tagAlign bed3+
Organism
790
Homo sapiens
Biosample type
790
tissue
456
cell line
209
primary cell
195
in vitro differentiated cells
3
stem cell
Organ
209
brain
155
liver
123
heart
pancreas
74
connective tissue
73
adipose tissue
73
blood vessel
73
vasculature
66
limb
35
nerve
29
musculature of body
28
artery
27
kidney
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
790
AMP
Genome assembly (visualization)
512
GRCh38
445
hg19
Lab
750
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
16
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
November, 2020
organ_slims!
pancreas
BIOSAMPLE
ASSAY
790 results
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Clear Filters
ChIP-seq
tissue
liver
145
left cardiac atrium
40
subcutaneous abdominal adipose tissue
36
heart left ventricle
35
tibial nerve
35
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