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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
741
total RNA-seq
724
ChIP-seq
190
ATAC-seq
174
single cell RNA-seq
135
DNase-seq
87
RNA microarray
24
pCHi-C
22
WGBS
17
snATAC-seq
14
small RNA-seq
9
RRBS
8
Hi-C
3
snDrop-seq
2
FAIRE-seq
Assay category
929
Transcription
724
DNA binding
344
DNA accessibility
31
DNA methylation
8
3D chromatin structure
Target of assay
506
histone modification
505
histone
277
narrow histone mark
228
broad histone mark
141
control
77
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
539
February, 2021
227
August, 2021
193
May, 2020
170
October, 2019
137
August, 2017
127
June, 2019
106
May, 2019
82
November, 2017
80
April, 2019
77
February, 2023
66
July, 2019
48
December, 2017
47
September, 2023
42
May, 2022
40
May, 2024
31
March, 2020
23
October, 2018
21
February, 2020
19
April, 2020
19
November, 2018
18
October, 2017
15
May, 2023
7
December, 2018
7
January, 2019
3
December, 2019
3
May, 2021
2
January, 2018
1
November, 2019
Available data
1364
bam
1308
bigWig
794
tsv
769
bed narrowPeak
415
bigBed narrowPeak
222
tagAlign
164
fastq
157
bed broadPeak
151
txt
142
bed bed3+
134
bigBed broadPeak
64
xls
18
bed bedMethyl
18
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2148
Homo sapiens
Biosample type
2150
tissue
736
primary cell
570
cell line
391
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2083
AMP
47
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
1377
GRCh38
1246
hg19
Lab
1861
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
90
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
16
missing controlled_by
Audit category:
1
inconsistent control read length
month_released!
November, 2020
organ_slims!
pancreas
limb
BIOSAMPLE
ASSAY
2150 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
small RNA-seq
RRBS
Hi-C
snDrop-seq
FAIRE-seq
tissue
adipose tissue
382
2
3
1
3
liver
167
145
20
1
2
1
3
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
heart left ventricle
3
35
2
18
3
1
4
1
1
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