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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
ChIP-seq
53
DNase-seq
8
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
56
DNA accessibility
56
DNA binding
9
Transcription
8
3D chromatin structure
6
DNA methylation
Target of assay
48
histone
48
histone modification
29
broad histone mark
19
narrow histone mark
8
control
Date released
61
June, 2019
26
August, 2017
21
October, 2019
10
July, 2019
7
May, 2019
6
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
101
bigWig
95
bam
91
bed narrowPeak
78
bigBed narrowPeak
68
bed broadPeak
55
bigBed broadPeak
54
bed bed3+
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
4
hic
3
bedpe bed3+
2
fastq
1
tar
1
txt
Organism
136
Homo sapiens
Biosample type
100
tissue
36
primary cell
Organ
936
pancreas
791
liver
678
connective tissue
518
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
136
AMP
Genome assembly (visualization)
108
hg19
83
GRCh38
Lab
136
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
2
audit script error
month_released!
November, 2020
BIOSAMPLE
ASSAY
136 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
FAIRE-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of leg
7
13
1
muscle of arm
17
renal pelvis
10
gastrocnemius medialis
4
1
+ See 6 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
See all biosamples
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