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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
403
total RNA-seq
74
single cell RNA-seq
51
WGBS
10
MeRIP-seq
9
Hi-C
2
Capture-C
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
479
Transcription
DNA binding
DNA accessibility
53
DNA methylation
9
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
157
July, 2018
89
August, 2017
47
May, 2022
43
February, 2023
41
May, 2021
39
April, 2018
32
February, 2021
26
September, 2018
22
November, 2019
16
September, 2020
10
November, 2020
7
March, 2020
6
July, 2019
4
August, 2021
4
November, 2018
3
August, 2018
3
October, 2022
2
October, 2018
1
February, 2020
1
June, 2018
1
March, 2019
1
October, 2019
Available data
416
bam
415
tsv
411
bigWig
263
fastq
41
zippedFastqFolder
7
bedpe bed3+
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bed bed3+
1
bedpe
1
hdf5
Organism
554
Homo sapiens
Biosample type
306
tissue
205
primary cell
44
cell line
Organ
555
pancreas
497
connective tissue
410
adipose tissue
272
epithelium
210
liver
182
heart
147
bone element
139
kidney
76
vasculature
75
blood vessel
58
artery
31
brain
24
eye
22
musculature of body
15
embryo
12
limb
10
lung
5
nerve
4
skeleton
3
spleen
2
intestine
2
pericardium
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
443
AMP
103
HPAP
9
T1D
Genome assembly (visualization)
416
hg19
411
GRCh38
Lab
427
AMP-T2D consortium
103
Klaus Kaestner, Upenn
12
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
47
inconsistent ontology term
3
audit script error
Audit category:
1
inconsistent assembly
month_released!
October, 2017
assay_slims!
DNA binding
DNA accessibility
BIOSAMPLE
ASSAY
555 results
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total RNA-seq
single cell RNA-seq
WGBS
MeRIP-seq
Hi-C
Capture-C
RRBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
tissue
islet of Langerhans
284
4
3
1
body of pancreas
3
2
2
pancreas
2
2
1
1
1
primary cell
pancreatic alpha cell
52
12
31
1
pancreatic beta cell
21
12
16
1
pancreatic acinar cell
4
12
1
pancreatic ductal cell
4
10
pancreatic delta cell
11
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cell line
EndoC_BH1
33
6
1
2
1
Panc1
1
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