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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
330
total RNA-seq
74
single cell RNA-seq
36
ATAC-seq
8
DNase-seq
4
WGBS
2
FAIRE-seq
2
small RNA-seq
1
Hi-C
Assay category
406
Transcription
DNA binding
46
DNA accessibility
4
DNA methylation
1
3D chromatin structure
Date released
153
July, 2018
94
August, 2017
40
May, 2021
40
September, 2018
39
April, 2018
26
February, 2021
20
November, 2019
7
August, 2020
7
March, 2020
7
November, 2018
October, 2017
5
September, 2017
4
July, 2019
4
June, 2019
3
August, 2018
3
September, 2020
2
October, 2018
2
October, 2019
1
June, 2018
Available data
487
bam
457
bigWig
417
tsv
319
fastq
80
zippedFastqFolder
70
bed narrowPeak
32
bigBed narrowPeak
8
bed bed3+
8
bed broadPeak
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
457
Homo sapiens
Biosample type
286
tissue
134
primary cell
37
cell line
Organ
494
connective tissue
457
pancreas
405
adipose tissue
200
epithelium
190
liver
110
heart
92
kidney
76
vasculature
74
blood vessel
60
artery
58
bone element
49
brain
43
limb
41
musculature of body
18
ureter
15
embryo
7
nerve
4
eye
3
spleen
3
vein
1
blood
1
bodily fluid
1
pericardium
Project
445
AMP
10
HPAP
2
T1D
Genome assembly (visualization)
451
GRCh38
441
hg19
Lab
447
AMP-T2D consortium
10
Klaus Kaestner, Upenn
Audit category:
40
inconsistent ontology term
Audit category:
1
inconsistent assembly
month_released!
October, 2017
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
457 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
small RNA-seq
Hi-C
tissue
islet of Langerhans
266
2
1
1
body of pancreas
2
4
2
2
pancreas
1
2
2
1
primary cell
pancreatic alpha cell
10
12
13
pancreatic beta cell
10
12
10
pancreatic acinar cell
4
12
5
pancreatic ductal cell
4
10
4
pancreatic delta cell
11
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cell line
EndoC_BH1
33
2
Panc1
1
1
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