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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
total RNA-seq
24
DNase-seq
23
ATAC-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
DNA binding
193
Transcription
47
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Date released
144
May, 2020
40
May, 2022
20
June, 2019
13
August, 2021
10
July, 2019
6
August, 2017
5
December, 2019
5
January, 2019
4
November, 2018
3
February, 2021
3
March, 2020
2
October, 2019
1
December, 2018
1
February, 2020
Available data
208
bigWig
189
bam
174
tsv
46
bed narrowPeak
25
bed bed3+
24
bigBed narrowPeak
23
bed broadPeak
23
bigBed broadPeak
13
fastq
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
257
Homo sapiens
Biosample type
224
tissue
23
cell line
10
primary cell
Organ
723
pancreas
530
connective tissue
417
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
67
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
vein
4
spleen
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
257
AMP
Genome assembly (visualization)
214
hg19
189
GRCh38
Lab
204
AMP-T2D consortium
40
Karen Mohlke, UNC
13
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
month_released!
October, 2017
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
257 results
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total RNA-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
2
20
3
1
1
1
1
1
renal pelvis
10
right lobe of liver
3
2
1
1
2
left renal pelvis
4
right renal pelvis
4
cell line
HepG2
14
1
1
2
2
2
1
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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