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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ChIP-seq
Assay category
85
DNA binding
Target of assay
50
histone
50
histone modification
35
transcription factor
28
narrow histone mark
22
broad histone mark
6
chromatin remodeller
3
RNA binding protein
1
recombinant protein
Date released
39
August, 2017
32
September, 2018
10
November, 2017
October, 2017
3
November, 2018
1
December, 2017
Available data
85
bam
85
fastq
83
bigWig
45
bed narrowPeak
14
bed bed3+
12
bigBed narrowPeak
Organism
85
Homo sapiens
Biosample type
44
primary cell
22
tissue
13
cell line
6
in vitro differentiated cells
Organ
54
pancreas
21
epithelium
17
connective tissue
13
liver
12
adipose tissue
1
embryo
Project
85
AMP
Genome assembly (visualization)
83
hg19
76
GRCh38
Lab
85
AMP-T2D consortium
Audit category:
85
missing controlled_by
Audit category:
6
inconsistent control run_type
5
inconsistent control read length
month_released!
October, 2017
BIOSAMPLE
ASSAY
85 results
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ChIP-seq
primary cell
pancreatic endocrine cell
23
pancreatic ductal cell
13
pancreatic acinar cell
8
tissue
white adipose tissue
12
islet of Langerhans
10
cell line
HepG2
13
in vitro differentiated cells
adipocyte
5
pancreatic endoderm
1
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