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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
43
ChIP-seq
6
snATAC-seq
Assay category
180
Transcription
82
DNA accessibility
43
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
406
November, 2017
307
August, 2017
275
October, 2019
218
June, 2019
199
May, 2021
150
May, 2020
125
August, 2021
120
May, 2019
105
February, 2023
99
May, 2022
94
December, 2017
80
April, 2019
80
November, 2018
74
October, 2018
57
February, 2021
46
September, 2018
40
May, 2024
39
November, 2019
34
December, 2018
25
January, 2019
24
February, 2018
October, 2017
16
January, 2021
11
May, 2023
11
September, 2017
10
April, 2020
8
July, 2019
7
August, 2020
7
March, 2020
4
March, 2019
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
106
bed narrowPeak
64
xls
34
bam
32
bigWig
24
tagAlign
3
bed bed3+
Organism
125
Homo sapiens
Biosample type
70
tissue
33
in vitro differentiated cells
18
cell line
4
primary cell
Organ
70
kidney
22
liver
4
epithelium
2
connective tissue
Project
125
AMP
Genome assembly (visualization)
90
GRCh38
41
hg19
Lab
70
Katalin Susztak, Upenn
35
AMP-T2D consortium
18
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
month_released!
October, 2017
BIOSAMPLE
ASSAY
125 results
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Clear Filters
ATAC-seq
ChIP-seq
snATAC-seq
tissue
kidney
64
6
in vitro differentiated cells
neural progenitor cell
10
21
adipocyte
1
osteoblast
1
cell line
HepG2
18
primary cell
hepatocyte
4
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