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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
ChIP-seq
Assay category
201
Transcription
123
DNA accessibility
108
DNA binding
53
DNA methylation
8
3D chromatin structure
Target of assay
72
histone
72
histone modification
38
narrow histone mark
34
broad histone mark
27
control
9
transcription factor
8
RNA binding protein
1
chromatin remodeller
Date released
26
August, 2017
24
October, 2019
19
December, 2017
13
November, 2019
6
June, 2019
6
November, 2017
5
May, 2019
4
August, 2021
4
May, 2021
1
March, 2020
Available data
108
bam
80
bigWig
76
bed narrowPeak
51
fastq
36
bigBed narrowPeak
7
tagAlign
6
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
Organism
108
Homo sapiens
Biosample type
71
primary cell
22
in vitro differentiated cells
15
cell line
Organ
539
liver
203
brain
164
pancreas
136
connective tissue
134
heart
108
epithelium
102
vasculature
99
blood vessel
66
limb
61
adipose tissue
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
21
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
106
AMP
2
T1D
Genome assembly (visualization)
80
hg19
76
GRCh38
Lab
108
AMP-T2D consortium
Audit category:
25
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
5
inconsistent control read length
month_released!
October, 2017
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
108 results
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Clear Filters
ChIP-seq
primary cell
endothelial cell of umbilical vein
17
pancreatic alpha cell
13
pancreatic beta cell
13
epithelial cell of proximal tubule
10
kidney epithelial cell
5
+ See 4 more…
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
pancreatic PP cell
3
cell line
EndoC_BH1
15
See all biosamples
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