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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
Assay category
201
Transcription
123
DNA accessibility
120
DNA binding
53
DNA methylation
8
3D chromatin structure
Target of assay
93
histone
93
histone modification
49
narrow histone mark
44
broad histone mark
27
control
transcription factor
8
RNA binding protein
1
chromatin remodeller
Date released
26
August, 2017
24
October, 2019
21
September, 2018
17
December, 2017
12
November, 2019
4
August, 2021
4
June, 2019
4
May, 2019
4
November, 2017
3
May, 2021
1
March, 2020
Available data
120
bam
92
bigWig
88
bed narrowPeak
68
fastq
29
bigBed narrowPeak
6
tagAlign
4
bed broadPeak
4
bigBed broadPeak
3
bed bed3+
Organism
120
Homo sapiens
Biosample type
87
primary cell
19
in vitro differentiated cells
14
cell line
Organ
214
liver
200
brain
199
pancreas
120
epithelium
117
heart
113
connective tissue
93
vasculature
91
blood vessel
66
limb
56
adipose tissue
42
kidney
39
musculature of body
35
nerve
29
artery
19
embryo
17
vein
14
spleen
9
blood
9
bodily fluid
4
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
118
AMP
2
T1D
Genome assembly (visualization)
92
hg19
88
GRCh38
Lab
120
AMP-T2D consortium
Audit category:
22
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
month_released!
October, 2017
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
120 results
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ChIP-seq
primary cell
endothelial cell of umbilical vein
17
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic ductal cell
13
epithelial cell of proximal tubule
9
+ See 6 more…
in vitro differentiated cells
hepatocyte
13
Hepatic endoderm
4
pancreatic PP cell
2
cell line
EndoC_BH1
14
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