Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
755
ChIP-seq
Assay category
755
DNA binding
217
Transcription
65
DNA accessibility
9
DNA methylation
7
3D chromatin structure
1
DNA sequencing
Target of assay
341
transcription factor
278
histone modification
277
histone
175
narrow histone mark
133
control
102
broad histone mark
82
recombinant protein
61
RNA binding protein
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
406
November, 2017
89
October, 2019
63
December, 2017
50
May, 2020
49
November, 2018
48
August, 2017
28
May, 2019
22
August, 2021
October, 2017
Available data
698
bam
598
bigWig
577
bed narrowPeak
461
fastq
440
bigBed narrowPeak
190
tagAlign
70
bed broadPeak
64
bigBed broadPeak
6
bed bed3+
3
tar
1
tagAlign bed3+
Organism
755
Homo sapiens
Biosample type
378
cell line
349
tissue
15
in vitro differentiated cells
13
primary cell
Organ
552
liver
218
pancreas
203
brain
153
connective tissue
134
heart
129
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
755
AMP
Genome assembly (visualization)
546
hg19
525
GRCh38
Lab
737
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
October, 2017
BIOSAMPLE
ASSAY
755 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
cell line
HepG2
378
tissue
liver
145
layer of hippocampus
23
substantia nigra
16
angular gyrus
15
caudate nucleus
15
+ See 65 more…
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
See all biosamples
Download