Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
870
ChIP-seq
252
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
870
DNA binding
Target of assay
612
histone modification
611
histone
319
narrow histone mark
292
broad histone mark
182
control
76
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
195
October, 2019
154
August, 2017
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
48
December, 2017
40
May, 2024
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
6
September, 2017
2
March, 2020
Available data
692
bam
588
bed narrowPeak
587
bigWig
371
bigBed narrowPeak
224
tagAlign
189
fastq
32
bed broadPeak
14
bed bed3+
1
tagAlign bed3+
Organism
863
Homo sapiens
Biosample type
870
tissue
471
cell line
235
primary cell
192
in vitro differentiated cells
3
stem cell
Organ
194
brain
155
liver
123
heart
107
pancreas
73
blood vessel
73
vasculature
66
limb
62
connective tissue
61
adipose tissue
35
nerve
29
musculature of body
28
artery
27
kidney
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
868
AMP
2
T1D
Genome assembly (visualization)
562
GRCh38
501
hg19
Lab
830
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
October, 2017
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
870 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
tissue
liver
145
islet of Langerhans
61
left cardiac atrium
40
subcutaneous abdominal adipose tissue
36
body of pancreas
35
+ See 102 more…
See all biosamples
Download