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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
ATAC-seq
3
Hi-C
Assay category
7
DNA accessibility
3
3D chromatin structure
Date released
4
February, 2021
3
February, 2023
3
October, 2022
Available data
3003
bigWig
2986
bam
1586
bed narrowPeak
1402
tsv
995
fastq
957
bigBed narrowPeak
294
bed broadPeak
262
bigBed broadPeak
250
bed bed3+
232
tagAlign
22
hic
21
bedpe bed3+
19
bed bedMethyl
19
bigBed bedMethyl
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
10
Homo sapiens
Biosample type
7
in vitro differentiated cells
3
primary cell
Organ
4
connective tissue
3
epithelium
3
pancreas
Project
7
AMP
3
HPAP
Genome assembly (visualization)
10
hg19
Lab
4
AMP-T2D consortium
3
Klaus Kaestner, Upenn
3
Struan F.A. Grant, CHOP
Audit category:
3
audit script error
1
inconsistent ontology term
month_released!
October, 2017
BIOSAMPLE
ASSAY
10 results
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ATAC-seq
Hi-C
in vitro differentiated cells
adipocyte
4
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
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