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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
393
ChIP-seq
96
total RNA-seq
11
ATAC-seq
2
Hi-C
1
pCHi-C
Assay category
393
DNA binding
96
Transcription
11
DNA accessibility
2
3D chromatin structure
Target of assay
345
transcription factor
78
recombinant protein
62
RNA binding protein
30
chromatin remodeller
30
histone
30
histone modification
15
broad histone mark
15
narrow histone mark
13
control
2
other context
2
other post-translational modification
Date released
266
November, 2017
93
February, 2021
54
November, 2018
27
December, 2018
23
August, 2021
20
January, 2019
October, 2019
14
November, 2019
March, 2020
5
May, 2021
1
January, 2018
Available data
490
bigWig
485
bam
384
bed narrowPeak
367
fastq
343
bigBed narrowPeak
96
tsv
58
bed broadPeak
58
bigBed broadPeak
17
tagAlign
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bed3+
Organism
503
Homo sapiens
Biosample type
1561
tissue
601
primary cell
503
cell line
283
in vitro differentiated cells
3
stem cell
Organ
330
liver
64
artery
64
blood vessel
64
heart
64
vasculature
55
blood
55
bodily fluid
45
epithelium
45
pancreas
8
embryo
Project
502
AMP
1
T1D
Genome assembly (visualization)
503
hg19
439
GRCh38
Lab
488
AMP-T2D consortium
15
Bing Ren, UCSD
Audit category:
45
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
month_released!
October, 2017
October, 2019
March, 2020
BIOSAMPLE
ASSAY
503 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
pCHi-C
cell line
HepG2
322
5
1
1
1
smooth muscle cell of the coronary artery
4
52
8
GM12878
54
1
EndoC_BH1
12
31
1
1
H1-hESC
8
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