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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
DNase-seq
53
ChIP-seq
1
ATAC-seq
Assay category
206
DNA accessibility
53
DNA binding
Target of assay
48
histone
48
histone modification
26
broad histone mark
22
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
187
June, 2019
41
August, 2017
12
November, 2017
9
November, 2018
8
October, 2019
October, 2017
1
March, 2019
1
November, 2020
Available data
2795
bam
2593
bigWig
1481
tsv
1361
bed narrowPeak
914
fastq
681
bigBed narrowPeak
364
tagAlign
270
bed bed3+
259
bed broadPeak
226
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
253
Homo sapiens
Biosample type
209
tissue
cell line
49
primary cell
1
in vitro differentiated cells
Organ
78
kidney
46
musculature of body
44
brain
36
limb
30
heart
22
epithelium
19
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
5
liver
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
259
AMP
Genome assembly (visualization)
235
hg19
233
GRCh38
Lab
258
AMP-T2D consortium
1
Mark McCarthy, Oxford
Audit category:
4
inconsistent ontology term
Audit category:
2
inconsistent assembly
month_released!
October, 2017
biosample_type!
cell line
BIOSAMPLE
ASSAY
259 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 45 more…
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
+ See 18 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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