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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
35
ATAC-seq
3
Hi-C
3
pCHi-C
3
total RNA-seq
2
RRBS
2
WGBS
1
ChIP-seq
Assay category
96
Transcription
35
DNA accessibility
4
DNA methylation
3
3D chromatin structure
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
92
August, 2021
36
February, 2023
5
March, 2020
4
July, 2019
3
February, 2020
1
April, 2019
1
October, 2019
Available data
bam
184
bigWig
168
tsv
151
bed narrowPeak
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
142
Homo sapiens
Biosample type
141
tissue
1
primary cell
Organ
256
pancreas
210
kidney
207
epithelium
142
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
39
artery
39
musculature of body
36
brain
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
142
AMP
Genome assembly (visualization)
35
GRCh38
6
hg19
Lab
142
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
October, 2017
files.file_type!
bam
BIOSAMPLE
ASSAY
142 results
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single cell RNA-seq
ATAC-seq
Hi-C
pCHi-C
total RNA-seq
RRBS
WGBS
ChIP-seq
tissue
coronary artery
35
1
heart left ventricle
18
1
1
1
2
1
heart right ventricle
17
1
1
right cardiac atrium
18
1
left cardiac atrium
18
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primary cell
cardiac fibroblast
1
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