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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
single cell RNA-seq
2
pCHi-C
1
FAIRE-seq
Assay category
203
DNA binding
36
DNA accessibility
24
Transcription
3
3D chromatin structure
Target of assay
175
histone
175
histone modification
115
narrow histone mark
60
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
16
July, 2019
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
234
bam
215
bigWig
197
bed narrowPeak
121
bigBed narrowPeak
104
tagAlign
44
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
11
fastq
3
hdf5
2
bed bedMethyl
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
268
Homo sapiens
Biosample type
248
tissue
20
primary cell
Organ
935
pancreas
780
liver
680
connective tissue
518
epithelium
488
adipose tissue
385
heart
350
kidney
268
brain
234
vasculature
229
blood vessel
159
bone element
141
artery
121
limb
92
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
22
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
268
AMP
Genome assembly (visualization)
210
GRCh38
156
hg19
Lab
268
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
month_released!
October, 2017
files.file_type!
bigBed bedMethyl
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
268 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
pCHi-C
FAIRE-seq
tissue
layer of hippocampus
23
brain
5
14
1
1
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 77 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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