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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
DNase-seq
110
ChIP-seq
1
ATAC-seq
Assay category
198
DNA accessibility
110
DNA binding
Target of assay
61
histone
61
histone modification
49
transcription factor
34
broad histone mark
27
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
181
June, 2019
70
November, 2017
39
August, 2017
9
October, 2019
8
November, 2018
October, 2017
1
March, 2019
Available data
2785
bam
2546
bigWig
1691
bed narrowPeak
1241
fastq
1122
tsv
1008
bigBed narrowPeak
362
tagAlign
308
bed broadPeak
276
bigBed broadPeak
246
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
23
hic
22
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
4
tar
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
302
Homo sapiens
Biosample type
206
tissue
59
cell line
43
primary cell
Organ
78
kidney
63
liver
46
musculature of body
44
brain
36
limb
30
heart
22
epithelium
20
pancreas
18
ureter
17
vasculature
13
blood vessel
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
308
AMP
Genome assembly (visualization)
285
hg19
269
GRCh38
Lab
307
AMP-T2D consortium
1
Mark McCarthy, Oxford
Audit category:
3
inconsistent ontology term
Audit category:
13
inconsistent control read length
2
inconsistent assembly
month_released!
October, 2017
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
308 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 43 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
+ See 14 more…
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