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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
ChIP-seq
27
DNase-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
194
DNA binding
31
DNA accessibility
21
Transcription
1
DNA methylation
Target of assay
172
histone
172
histone modification
112
narrow histone mark
60
broad histone mark
22
control
Date released
86
October, 2019
82
November, 2017
28
May, 2019
25
June, 2019
October, 2017
12
February, 2020
11
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
217
bam
195
bigWig
186
bed narrowPeak
110
bigBed narrowPeak
104
tagAlign
33
bed broadPeak
27
bed bed3+
27
bigBed broadPeak
23
tsv
2
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
249
Homo sapiens
Biosample type
249
tissue
primary cell
Organ
777
liver
644
connective tissue
595
pancreas
488
adipose tissue
380
heart
318
kidney
249
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
24
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
249
AMP
Genome assembly (visualization)
196
GRCh38
137
hg19
Lab
249
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
month_released!
October, 2017
lab.title!
Klaus Kaestner, Upenn
biosample_type!
primary cell
BIOSAMPLE
ASSAY
249 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
pCHi-C
FAIRE-seq
RRBS
tissue
layer of hippocampus
23
brain
5
14
1
1
1
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
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