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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
369
ChIP-seq
Assay category
369
DNA binding
Target of assay
768
histone modification
767
histone
504
transcription factor
397
narrow histone mark
369
broad histone mark
305
control
104
RNA binding protein
89
recombinant protein
35
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
93
August, 2017
56
May, 2019
50
November, 2017
43
October, 2019
37
April, 2019
20
May, 2024
19
October, 2018
15
December, 2017
10
May, 2021
October, 2017
8
August, 2021
8
February, 2018
6
November, 2019
4
January, 2019
Available data
304
bigWig
303
bed narrowPeak
273
bam
216
bigBed narrowPeak
86
tagAlign
79
fastq
26
bed broadPeak
11
bed bed3+
8
bigBed broadPeak
Organism
365
Homo sapiens
Biosample type
293
tissue
primary cell
56
in vitro differentiated cells
19
cell line
1
stem cell
Organ
60
brain
57
heart
51
pancreas
41
liver
40
connective tissue
36
blood vessel
36
vasculature
34
limb
20
adipose tissue
16
musculature of body
16
nerve
14
artery
13
epithelium
10
kidney
4
embryo
4
spleen
Project
369
AMP
Genome assembly (visualization)
291
GRCh38
248
hg19
Lab
338
AMP-T2D consortium
20
Patrick T. Ellinor, Broad
10
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
15
inconsistent control read length
1
inconsistent assembly
month_released!
October, 2017
lab.title!
Klaus Kaestner, Upenn
biosample_type!
primary cell
BIOSAMPLE
ASSAY
369 results
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Clear Filters
ChIP-seq
tissue
liver
22
left cardiac atrium
20
subcutaneous abdominal adipose tissue
20
tibial nerve
16
heart left ventricle
15
+ See 26 more…
in vitro differentiated cells
adipocyte
20
embryonic stem cell
11
hepatocyte
7
neural progenitor cell
7
pancreatic endoderm
4
+ See 5 more…
cell line
HepG2
9
EndoC_BH1
6
Panc1
4
stem cell
hESC
1
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