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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
ChIP-seq
31
DNase-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
single cell RNA-seq
2
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
203
DNA binding
35
DNA accessibility
24
Transcription
2
3D chromatin structure
2
DNA methylation
Target of assay
175
histone
175
histone modification
115
narrow histone mark
60
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
29
June, 2019
28
May, 2019
17
July, 2019
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
233
bam
213
bigWig
196
bed narrowPeak
120
bigBed narrowPeak
104
tagAlign
43
bed broadPeak
37
bigBed broadPeak
33
bed bed3+
26
tsv
11
fastq
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
268
Homo sapiens
Biosample type
249
tissue
19
primary cell
Organ
931
pancreas
791
liver
connective tissue
518
epithelium
490
adipose tissue
393
heart
354
kidney
270
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
24
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
268
AMP
Genome assembly (visualization)
209
GRCh38
156
hg19
Lab
268
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
month_released!
October, 2017
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
268 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
single cell RNA-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
layer of hippocampus
23
brain
5
14
1
1
1
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 77 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
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