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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1560
ChIP-seq
1444
total RNA-seq
518
ATAC-seq
363
single cell RNA-seq
207
DNase-seq
87
RNA microarray
84
snATAC-seq
66
WGBS
57
pCHi-C
34
Hi-C
18
small RNA-seq
15
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
4
DNA accessibility
Date released
84
February, 2021
2
December, 2019
2
July, 2019
August, 2017
1
August, 2021
1
November, 2018
1
October, 2019
Available data
84
txt
4
bam
4
bed narrowPeak
4
bigBed narrowPeak
4
bigWig
2
tsv
1
fastq
1
tar
Organism
90
Homo sapiens
Biosample type
90
tissue
1
primary cell
Organ
84
bone element
3
kidney
2
epithelium
1
adipose tissue
1
blood vessel
1
brain
1
connective tissue
1
pancreas
1
vasculature
1
vein
Project
91
AMP
Genome assembly (visualization)
4
hg19
Lab
91
AMP-T2D consortium
Audit category:
84
inconsistent ontology term
2
audit script error
month_released!
October, 2017
August, 2017
BIOSAMPLE
ASSAY
91 results
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RNA microarray
FAIRE-seq
tissue
bone element
84
frontal cortex
1
kidney
1
kidney interstitium
1
pancreas
1
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primary cell
endothelial cell of umbilical vein
1
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