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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
72
ChIP-seq
1
ATAC-seq
Assay category
205
DNA accessibility
72
DNA binding
Target of assay
47
transcription factor
25
histone
25
histone modification
13
narrow histone mark
12
broad histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
70
November, 2017
August, 2017
9
November, 2018
9
October, 2019
October, 2017
1
March, 2019
1
November, 2020
Available data
3095
bam
2883
bigWig
1663
bed narrowPeak
1511
tsv
1054
fastq
994
bigBed narrowPeak
299
tagAlign
277
bed broadPeak
270
bigBed broadPeak
240
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
277
Homo sapiens
Biosample type
183
tissue
59
cell line
35
primary cell
Organ
78
kidney
63
liver
44
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
8
connective tissue
8
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
277
AMP
Genome assembly (visualization)
259
GRCh38
253
hg19
Lab
276
AMP-T2D consortium
1
Mark McCarthy, Oxford
Audit category:
4
inconsistent ontology term
Audit category:
13
inconsistent control read length
month_released!
October, 2017
August, 2017
BIOSAMPLE
ASSAY
277 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 43 more…
cell line
HepG2
58
Panc1
1
primary cell
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 17 more…
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