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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
898
total RNA-seq
649
ChIP-seq
175
ATAC-seq
110
single cell RNA-seq
108
DNase-seq
85
RNA microarray
25
pCHi-C
22
snATAC-seq
18
WGBS
15
Hi-C
15
small RNA-seq
5
RRBS
4
MeRIP-seq
2
FAIRE-seq
Assay category
1023
Transcription
649
DNA binding
307
DNA accessibility
23
DNA methylation
15
3D chromatin structure
Target of assay
437
histone
437
histone modification
247
narrow histone mark
190
broad histone mark
149
control
65
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
August, 2017
238
October, 2019
193
May, 2020
120
July, 2018
115
May, 2019
101
August, 2021
95
February, 2023
95
June, 2019
82
November, 2017
74
October, 2018
73
July, 2019
66
May, 2022
57
April, 2019
48
December, 2017
40
March, 2020
40
May, 2021
40
November, 2019
26
November, 2018
25
February, 2020
October, 2017
19
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
January, 2018
1
August, 2022
1
May, 2023
Available data
1624
bam
1449
bigWig
975
tsv
713
bed narrowPeak
446
bigBed narrowPeak
185
fastq
165
tagAlign
115
bed broadPeak
111
bed bed3+
108
bigBed broadPeak
95
txt
19
bed bedMethyl
19
bigBed bedMethyl
10
bedpe bed3+
10
hic
5
bed bed3
1
bedpe
1
csv
1
tagAlign bed3+
Organism
2129
Homo sapiens
Biosample type
2131
tissue
993
primary cell
643
cell line
326
in vitro differentiated cells
10
stem cell
Organ
489
connective tissue
430
adipose tissue
353
pancreas
307
liver
kidney
273
heart
249
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
73
artery
56
eye
56
musculature of body
43
nerve
24
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2081
AMP
31
T1D
19
LungMap
Genome assembly (visualization)
1482
GRCh38
1470
hg19
Lab
2009
AMP-T2D consortium
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
91
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
1
inconsistent control read length
month_released!
October, 2017
August, 2017
organ_slims!
kidney
BIOSAMPLE
ASSAY
2131 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
snATAC-seq
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
209
29
67
4
7
3
1
4
liver
167
97
20
1
2
1
1
1
bone element
84
heart left ventricle
3
35
2
18
3
1
4
1
1
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