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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
ChIP-seq
30
DNase-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
single cell RNA-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
197
DNA binding
34
DNA accessibility
24
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
173
histone
173
histone modification
113
narrow histone mark
60
broad histone mark
26
control
1
RNA binding protein
1
transcription factor
Date released
86
October, 2019
85
November, 2017
28
June, 2019
28
May, 2019
16
July, 2019
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
226
bam
206
bigWig
191
bed narrowPeak
115
bigBed narrowPeak
104
tagAlign
38
bed broadPeak
32
bed bed3+
32
bigBed broadPeak
26
tsv
5
fastq
2
hdf5
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
260
Homo sapiens
Biosample type
249
tissue
11
primary cell
Organ
938
pancreas
791
liver
682
connective tissue
521
epithelium
489
adipose tissue
393
heart
354
kidney
270
brain
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
24
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
260
AMP
Genome assembly (visualization)
204
GRCh38
148
hg19
Lab
260
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
month_released!
October, 2017
August, 2018
organ_slims!
vasculature
BIOSAMPLE
ASSAY
260 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
single cell RNA-seq
Hi-C
pCHi-C
FAIRE-seq
RRBS
tissue
layer of hippocampus
23
brain
5
14
1
1
1
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 77 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the hippocampus
1
See all biosamples
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