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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
16
single cell RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
75
Transcription
4
DNA accessibility
Date released
90
February, 2021
57
August, 2021
7
February, 2023
7
May, 2022
1
November, 2018
1
October, 2022
1
September, 2018
Available data
3374
bam
3152
bigWig
1805
bed narrowPeak
1597
tsv
1338
fastq
1036
bigBed narrowPeak
384
tagAlign
318
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
163
Homo sapiens
Biosample type
158
tissue
3
in vitro differentiated cells
2
primary cell
1
cell line
Organ
88
bone element
62
kidney
6
pancreas
4
skeleton
1
liver
1
musculature of body
Project
164
AMP
Genome assembly (visualization)
4
hg19
Lab
98
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
6
audit script error
month_released!
October, 2017
June, 2018
BIOSAMPLE
ASSAY
164 results
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Clear Filters
RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
13
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
+ See 4 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
primary cell
pancreatic cell
2
cell line
MIN6
1
See all biosamples
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