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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ATAC-seq
11
ChIP-seq
1
DNAme array
1
Hi-C
Assay category
Transcription
33
DNA accessibility
11
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
6
histone
6
histone modification
4
narrow histone mark
4
transcription factor
2
broad histone mark
1
control
Date released
406
November, 2017
322
August, 2017
284
October, 2019
218
June, 2019
152
February, 2021
151
May, 2020
139
August, 2021
122
May, 2022
120
May, 2019
94
December, 2017
93
February, 2023
87
November, 2018
80
April, 2019
74
October, 2018
49
March, 2020
46
September, 2018
43
July, 2019
41
May, 2021
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
October, 2017
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
21
bam
19
bed narrowPeak
6
bigWig
6
tagAlign
1
bed broadPeak
1
bedpe
1
fastq
1
hic
Organism
46
Homo sapiens
Biosample type
18
primary cell
17
cell line
6
in vitro differentiated cells
5
tissue
Organ
25
pancreas
20
epithelium
Project
45
AMP
1
T1D
Genome assembly (visualization)
22
hg19
21
GRCh38
Lab
Kyle Gaulton, UCSD
41
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
20
inconsistent ontology term
month_released!
October, 2017
lab.title!
Kyle Gaulton, UCSD
assay_slims!
Transcription
BIOSAMPLE
ASSAY
46 results
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ATAC-seq
ChIP-seq
DNAme array
Hi-C
primary cell
monocyte
13
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
neutrophil
1
cell line
EndoC_BH1
16
1
in vitro differentiated cells
cardiomyocytes
3
pancreatic PP cell
3
tissue
islet of Langerhans
4
1
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